XYZChemModel Class Reference

Collaboration diagram for XYZChemModel:

Package Functions
int	addVert (String name, float x, float y, float z)
void	findBB ()
void	paint (Graphics g)
void	transform ()
	XYZChemModel ()
	XYZChemModel (InputStream is) throws Exception

Static Package Functions
	[static initializer]

Package Attributes
Atom	atoms []
Matrix3D	mat
int	maxvert
int	nvert
boolean	transformed
int	tvert []
float	vert []
float	xmax
float	xmin
float	ymax
float	ymin
float	zmax
float	zmin
int	ZsortMap []

Static Package Attributes
static final Map< String, Atom >	atomTable = new HashMap<String, Atom>()
static Atom	defaultAtom

Detailed Description

The representation of a Chemical .xyz model

Definition at line 68 of file XYZApp.java.

Constructor & Destructor Documentation

XYZChemModel() [1/2]

XYZChemModel.XYZChemModel ( )

package

Definition at line 92 of file XYZApp.java.

References mat, Matrix3D.xrot(), and Matrix3D.yrot().

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XYZChemModel() [2/2]

XYZChemModel.XYZChemModel ( InputStream  is ) throws Exception

package

Create a Chemical model by parsing an input stream

Definition at line 99 of file XYZApp.java.

References addVert(), and name.

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Member Function Documentation

[static initializer]()

XYZChemModel.[static initializer]

staticpackage

addVert()

int XYZChemModel.addVert ( String  name, float  x, float  y, float  z  )

package

Add a vertex to this model

Definition at line 151 of file XYZApp.java.

References a, atoms, atomTable, defaultAtom, maxvert, name, nvert, and vert.

Referenced by XYZChemModel().

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findBB()

void XYZChemModel.findBB ( )

package

Find the bounding box of this model

Definition at line 254 of file XYZApp.java.

References nvert, and vert.

Referenced by XYZApp.run().

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paint()

void XYZChemModel.paint ( Graphics  g )

package

Paint this model to a graphics context. It uses the matrix associated with this model to map from model space to screen space. The next version of the browser should have double buffering, which will make this much nicer

Definition at line 196 of file XYZApp.java.

References a, atoms, nvert, Atom.paint(), transform(), tvert, vert, and ZsortMap.

Referenced by XYZApp.paint().

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transform()

void XYZChemModel.transform ( )

package

Transform all the points in this model

Definition at line 181 of file XYZApp.java.

References mat, nvert, Matrix3D.transform(), transformed, tvert, and vert.

Referenced by paint().

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Member Data Documentation

atoms

Atom XYZChemModel.atoms[]

package

Definition at line 71 of file XYZApp.java.

Referenced by addVert(), and paint().

atomTable

final Map<String, Atom> XYZChemModel.atomTable = new HashMap<String, Atom>()

staticpackage

Definition at line 75 of file XYZApp.java.

Referenced by addVert().

defaultAtom

Atom XYZChemModel.defaultAtom

staticpackage

Definition at line 76 of file XYZApp.java.

Referenced by addVert().

mat

Matrix3D XYZChemModel.mat

package

Definition at line 89 of file XYZApp.java.

Referenced by XYZApp.paint(), transform(), and XYZChemModel().

maxvert

int XYZChemModel.maxvert

package

Definition at line 74 of file XYZApp.java.

Referenced by addVert().

nvert

int XYZChemModel.nvert

package

Definition at line 74 of file XYZApp.java.

Referenced by addVert(), findBB(), paint(), and transform().

transformed

boolean XYZChemModel.transformed

package

Definition at line 88 of file XYZApp.java.

Referenced by XYZApp.paint(), and transform().

tvert

int XYZChemModel.tvert[]

package

Definition at line 72 of file XYZApp.java.

Referenced by paint(), and transform().

vert

float XYZChemModel.vert[]

package

Definition at line 70 of file XYZApp.java.

Referenced by addVert(), findBB(), paint(), and transform().

xmax

float XYZChemModel.xmax

package

Definition at line 90 of file XYZApp.java.

Referenced by XYZApp.paint(), and XYZApp.run().

xmin

float XYZChemModel.xmin

package

Definition at line 90 of file XYZApp.java.

Referenced by XYZApp.paint(), and XYZApp.run().

ymax

float XYZChemModel.ymax

package

Definition at line 90 of file XYZApp.java.

Referenced by XYZApp.paint(), and XYZApp.run().

ymin

float XYZChemModel.ymin

package

Definition at line 90 of file XYZApp.java.

Referenced by XYZApp.paint(), and XYZApp.run().

zmax

float XYZChemModel.zmax

package

Definition at line 90 of file XYZApp.java.

Referenced by XYZApp.paint(), and XYZApp.run().

zmin

float XYZChemModel.zmin

package

Definition at line 90 of file XYZApp.java.

Referenced by XYZApp.paint(), and XYZApp.run().

ZsortMap

int XYZChemModel.ZsortMap[]

package

Definition at line 73 of file XYZApp.java.

Referenced by paint().

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The documentation for this class was generated from the following file:

• build/windows-installer/unpacked/java-se-8u41-ri/demo/applets/MoleculeViewer/XYZApp.java